TerminologyΒΆ
This is a collection of definitions for terms which appear frequently in the documentation and codebase.
activation |
The state of a toehold switch being correctly unbound for translation, or the probability of. This equivalent to the proportion of toehold switch strands which have all of:
|
unbinding |
The state of an RNA subsequence being unpaired in a way that would hinder toehold switch activation, or the probability of. |
RBS unbinding |
The probability of every base in the RBS subsequence being unpaired. |
AUG unbinding |
The probability of every base in the first AUG sequence following the RBS being unpaired. |
post-AUG unbinding |
The probability of every base in the sequence following the start codon not being bound to any base in the start codon or any base upstream of the start codon. |