References

FPP20

Mark E. Fornace, Nicholas J. Porubsky, and Niles A. Pierce. A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed. ACS Synthetic Biology, 9(10):2665–2678, October 2020. URL: https://pubs.acs.org/doi/10.1021/acssynbio.9b00523 (visited on 2021-07-28), doi:10.1021/acssynbio.9b00523.

GSCY14

Alexander A. Green, Pamela A. Silver, James J. Collins, and Peng Yin. Toehold Switches: De-Novo-Designed Regulators of Gene Expression. Cell, 159(4):925–939, November 2014. URL: https://linkinghub.elsevier.com/retrieve/pii/S0092867414012896 (visited on 2021-07-23), doi:10.1016/j.cell.2014.10.002.

KBGJ19

Ana Kozomara, Maria Birgaoanu, and Sam Griffiths-Jones. miRBase: from microRNA sequences to function. Nucleic Acids Research, 47(D1):D155–D162, January 2019. URL: https://doi.org/10.1093/nar/gky1141 (visited on 2021-08-19), doi:10.1093/nar/gky1141.

MSS+12

Michael M. McKerns, Leif Strand, Tim Sullivan, Alta Fang, and Michael A. G. Aivazis. Building a Framework for Predictive Science. arXiv:1202.1056 [cs], February 2012. arXiv: 1202.1056. URL: http://arxiv.org/abs/1202.1056 (visited on 2021-07-28).